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The Japanese Container Pond: Build a Medaka Biotope

By Motoki Totsugi — founder of Tokyo Aqua Garden, keeping aquariums professionally in Tokyo since 2005 · Updated July 2026
A Japanese container biotope with flowering plants and medaka
A working biotope: flowers above, medaka below — photographed at one of our containers.

Walk through a Japanese neighborhood in summer and you will see them on balconies and doorsteps: glazed ceramic bowls holding floating plants, pondweed, and a school of small rice fish. In Japan we call this miniature ecosystem a biotope (), from the Greek bio (life) and topos (place), a word that here means a self-balancing container pond: no pump, no filter, no electricity. Just water, soil, plants, and animals keeping each other alive.

One fork first. If you want an in-ground pond with a liner, a pump, and koi, that is a construction project, not this guide. This one is for you if you have a patio, balcony, or sunny deck corner and an afternoon. Americans are arriving at the same idea as the "patio pond"; the Japanese version adds decades of refinement and one particular fish, the medaka (), the Japanese rice fish. Here is the method, adapted for American containers, plants, and winters.

KEY TAKEAWAYS 要点 — the short version

What "Biotope" Means in Japan

Ecologists use the word for a habitat where a community of species lives in balance. Japanese hobbyists use it in a friendlier sense: a place where creatures live comfortably, close to nature, even in a small space. In practice that means a container pond kept simple enough to balance itself. The traditional vessel is the suiren-bachi (), a wide glazed ceramic bowl, literally "water lily pot," made to sit outdoors in sun, wind, and rain. It is the Japanese equivalent of a bird feeder: a piece of nature checked each morning with a cup of tea in hand.

The Cycle That Cleans the Water

A biotope stays clean because its residents run a tiny water-treatment plant:

Once this cycle establishes, water quality stabilizes and you almost never need to clean — the big difference from keeping an aquarium. Sunlight powers the loop, and the animals need it too, so a biotope lives outdoors. Ordinary rain is fine; even in overflow, fish are rarely washed out. In a torrential downpour, lay a board over part of the container.

What You Need: The Five Essentials

Illustration by Satoko Nakajima
Plants and a spawning surface do the filter's job.

The Japanese checklist is five items, all sold in the US.

ItemJapanese standardUS equivalent
ContainerSuiren-bachi, resin medaka bowls, tubs, foam boxesGlazed planter (drainage hole plugged), poly stock tank, barrel with liner, foam cooler
CreaturesMedaka, shrimp, snails; goldfish in larger tubsMedaka from US breeders; White Clouds, cherry and Amano shrimp, trapdoor snails
WaterTap water aged 1 to 2 days in sunlightSun-aging, or a dechlorinator where the utility uses chloramine
SubstrateAkadama () clay, medaka soil, gravel, sandAkadama sold as bonsai soil, aquatic plant soil, pea gravel
PlantsFloaters, submerged weeds, marginalsSee the plant section below

Beyond the five, keep a reed screen, a board, and netting on hand for harsh sun, storms, and insects. Deep and large is easiest: more water means steadier temperature and chemistry, and depth lets you adjust the level with the seasons. Akadama is the popular substrate; medaka breeders often use medaka soil, lily-focused water gardens a heavier pond loam. A filled bowl is heavy, so place it before filling.

How to Set It Up, Step by Step

1. Place the container

Pick a spot with good sun and good airflow. Ventilation matters as much as light: it keeps plants from steaming and blunts sudden water-temperature spikes. In a hot US summer, plan on that reed screen for the fiercest afternoon hours.

2. Add substrate and set the plants

Spread a layer of substrate across the bottom. Plant into small pots where convenient; potted plants are easier to rearrange and to rescue if one fails.

3. Pour the water slowly

Fill gently so you do not blast a crater in the substrate; the Japanese trick is to cup your palm where the water lands. Use dechlorinated water, covered below.

4. Wait 7 to 10 days

A just-built biotope is not stable: fresh substrate is still shedding nutrients and the plants have not settled in. After about ten days the water calms, and animals can go in with far less risk. Remove any plant that died in the meantime.

5. Add fish a few at a time

Start with 2 or 3 medaka, hold there for the first month, and add more once the water proves stable. Acclimate first: float the bag about 20 minutes, then mix pond water into it bit by bit before release. Japanese keepers call this mizu-awase (), "water matching."

Before you keep medaka outdoors in the US, check your state's rules. Rice fish are not native to North America and have already established wild populations in places such as California. Some states regulate which non-native fish may be kept or released outdoors. Confirm what your state's fish and wildlife agency allows before setting up an outdoor container, and never release fish, eggs, or pond water into a ditch, storm drain, or waterway. Note that the mild zones where medaka overwinter easily are exactly the ones where an escaped population is most likely to take hold, so containment matters most there.

Choosing Plants, the American Edition

Plants are the showpiece. Pick for the finished picture you want, favoring species that tolerate temperature swings. The classic Japanese lineup translates to US nurseries in three layers. Expect many to die back in winter; some regrow from the same pot in spring.

Check your state's invasive species list first. Water hyacinth is seriously invasive in the US: banned or restricted in a number of states, particularly warmer ones where it survives winter and chokes waterways. Water lettuce is regulated in several states too. Buy floaters that are legal where you live, never dump pond plants or water into a ditch, storm drain, or waterway, and compost unwanted plants in a sealed bag.

Choosing the Creatures

Illustration by Satoko Nakajima
Medaka are the classic biotope fish.

The selection rule: choose animals that ride out day-to-night temperature swings and the seasons. That points at Japan's paddy and stream species, nearly all sold in the US.

Goldfish appear in Japanese biotopes too, but in larger tubs; in a bowl, stay with medaka-scale animals. And whatever the end goal: 2 or 3 fish in month one, more only after the water proves itself.

From Our Rooftop Containers
We maintain aquariums professionally, but the container pond is what many of us keep for ourselves: it asks little and gives back small events, fry among the floating roots in June, the school rising to your shadow at breakfast. The habit we recommend to every beginner: look at the pond for one minute a day. Nearly every problem announces itself days in advance to an owner who looks.

Three Ways to Lay It Out

Japanese biotopes follow one of three directions. A plant-forward layout packs in submerged and floating species and builds the richest ecosystem for medaka and shrimp. A creature-forward layout keeps planting minimal so the animals are easy to observe; for breeding, center it on water hyacinth (where legal) or hornwort, whose fine roots make eggs easy to collect. A flower-forward layout stars blooming aquatics, with one warning: aquatic plant fertilizers can harm livestock, so confirm a product is fish-safe first.

Everyday Care

The whole routine is topping off water, trimming plants, and feeding lightly.

Topping off. Three situations call for it. On hot days, evaporation concentrates the water, so top off to hold the chemistry steady. On cold days, keep the level high; a fuller container resists freezing. And if green water gets dense, thin it until you can just see the bottom; green water is harmless suspended algae, prized as fry food, and our green water guide covers both sides of that story. A top-off nudges temperature and quality back into line, not just volume.

The water itself. The traditional source is kumioki () water: tap water left in the sun for a day or two so the chlorine dissipates, preferred to conditioners as closer to nature. Keep a bucket of 2.5 gallons (10 liters) or more standing by. One US caveat: many utilities use chloramine, which never evaporates; check your water report, and if so, use an ordinary dechlorinator.

Feeding. An established biotope produces natural food, so offer only what disappears in a couple of minutes and skip days freely; leftovers are the main threat. Below about 50°F (10°C) in fall, stop feeding for the season.

Mosquitoes. The question every American asks, fairly, given West Nile virus. A stocked biotope is not a mosquito nursery; medaka eat larvae at the surface, the job rice farmers valued them for. The risk is fishless containers: for those, use mosquito dunks, the Bti (Bacillus thuringiensis israelensis) tablets at every US garden center, harmless to fish and pets when used as directed.

Getting Through Winter: A USDA Zone Guide

Illustration by Satoko Nakajima
A styrofoam container insulates against a hard winter.

Japanese keepers overwinter medaka outdoors as a matter of course, and they can do it in much of the US. The variable is not the fish but how solid your pond freezes: a USDA zone question. Keep the water level high in every zone.

An outdoor medaka container in winter, partly covered with a reed screen against the cold
An outdoor container through a Tokyo winter — a reed screen () blunts the cold while the medaka rest near the bottom. In colder zones, add a floating de-icer so the surface never seals over.

Next Steps

A biotope that survives its first summer tends to pull its owner deeper. Breeding is the usual first step: medaka hang eggs on fine plant roots through the warm months, and moving a few egg-laden stems to a separate container gives you a homegrown generation. That nursery is also where green water culture, linked above, comes in. And medaka bowls have a way of becoming plural; that is how Japanese balconies end up lined with them. Start with one bowl and a few fish.

FAQ

Q. Do I really need no pump or filter at all?
A. Correct: the cleaning cycle of fish, shrimp, snails, bacteria, and plants does the filter's job. If you want more fish than the balance allows, get a bigger container or a second bowl, not a filter.
Q. Won't a container of standing water breed mosquitoes?
A. Not if fish live in it; medaka eat larvae at the surface. For plant-only containers, drop in a Bti mosquito dunk monthly: the standard US control, fish- and pet-safe used as directed.
Q. Can medaka really survive an American winter outdoors?
A. In much of the country, yes. They overwinter under ice across Japan; the limit is water freezing solid, not cold. In roughly USDA zones 5 to 7, use a deep container, a high water level, and a breathing hole in the ice. In zone 4 and below, move the fish to a cold garage or shed.
Q. Where do I actually buy medaka in the United States?
A. Not at the chain pet store yet. Look to hobbyist breeders online, club auctions, and aquatics forums; medaka ship well. If you strike out, White Cloud Mountain minnows suit the same setup.
About Tokyo Aqua Garden
Tokyo Aqua Garden started as one hobbyist's side business in 2005. Today 23 of us install and maintain aquariums across Tokyo — and publish everything we learn, in Japanese and now in English.
Originally published in Japanese on t-aquagarden.com — adapted for international readers by the same team. Units, plants, products and winter guidance localized for the US.